"clustered with" is correct and usable in written English.
You can use it when referring to items in close proximity, or in a group. For example, "The snow-capped mountains were clustered with dark evergreen trees."
The remaining bands clustered with Methanosphaera stadmanae.
One group clustered with the early signature whereas the other clustered with the late signature (Fig. 5e).
Each disease clustered with a group of predictor variables.
Mr. Strothers, clustered with friends and relatives, declined to speak to reporters.
In front of Ahmet and Halston, there were twelve poles clustered with lights.
It was particularly interesting to observe that Smad3 clustered with the coactivator protein p300/CBP.
Inflorescence: >= 1 clustered with leaves on short-shoots, stalked, 1--4 cm, generally > leaf.
Snake clutches are usually clustered, with eggs strongly attached to each other.
All genes were clustered with hcluster_sg51 according to their sequence similarity52.
a, t-SNE 2D projection of the RNA expression data, clustered with DBSCAN (see Methods).
These similarity networks were then clustered with the InfoMap algorithm.
