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The sequencing reads were clustered on the basis of similarity (as described by Novak et al. 2010; Macas et al. 2011), and clusters containing at least 57 reads (representing around 0.01% of the genome) were used for further analysis.
We observed considerable heterogeneity between GBMs and we focused on two groups of seven patients clustered on the basis of the difference between their mean β-value and the one of control brain.
Life cycles are then clustered on the basis of estimated regression coefficients.
The compounds were clustered on the basis of their chemical structures, represented by Circular Fingerprints (CFP) [25] as discussed below.
Samples collected in days with similar atmospheric circulation patterns were clustered on the basis of wind speed and direction.
In hierarchy construction algorithms, such as hierarchical similarity clustering [32, 33], feature sets are clustered on the basis of high mutual pairwise similarity along a particular dimension.
For different customers, the representative load patterns (RLPs) are obtained and these are clustered on the basis of RLPs [26, 27].
These domains were clustered on the basis of sequence similarities into 33,879 domain families containing at least two members with less than 40% sequence identity.
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Instead of comparing data partitions, we propose to evaluate the stability of clustering on the basis of distances between resulting centroids.
Clustering on the basis of transcript abundance pattern shows that PtXIP1 1 and PtXIP1 2 are grouped with PtTIP3 1 and PtTIP3 2.
Importantly, clustering on the basis of these regions separated BLBCs and BRCA1-mutated breast tumors from luminal breast tumors.
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