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The cells within wells labeled with a blue * were clustered in the same manner as Figure 1 figure supplement 1. (C ) The standard deviation of ERK response per cluster is not significantly correlated with cluster density (p-value >0.05, Pearson correlation) indicating that ERK variability does not decrease when paracrine communication is inhibited.
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We performed k-means clustering in the same manner as clustering points in 64 dimensions [31].
Therefore, we performed k-means clustering in the same manner as clustering points in 64 dimensions [27].
In this manner, similar patterns were clustered together in the same manner as a taxonomic tree.
We investigated the grids where the entries belonging to each group had f occr higher than 5.0, and found that the separation in the former group related to the grids with high f occr, as shown in Figure 2. We also found that the latter group might be separated into two clusters in the same manner as that in the former group.
Testing regions were defined by clustering CpG sites in the same manner as for the simulations, and regions with no coverage in at least one sample were excluded from the analysis; this resulted in 14,104 genomic regions for testing.
Lags between boundaries are clustered by a decision tree in the same manner used for clustering spectral, fundamental frequency, and duration parameters in HMM synthesis.
Bootstrapping was performed by generating 1000 resampled alignments with the SeqBoot program of the Phylip package and clustering each of them in the same manner as the original alignment.
We cluster the yeast PPI networks in the same manner as edge-SN, except that we use edge-GDV-similarity as the distance metrics instead of using the shared-neighborhood measure.
Finally, the PFM for the downstream thymidine cluster (DTC) was constructed in the same manner as reported above.
They also showed that some of these genes map in a linked cluster and are commonly changed in the same manner.
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