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The two groups from the aflatoxin gene cluster were designated as the pksA group (containing pksA, nor-1, hexA and hexB genes) and the cypX group (containing ordA, vbs, cypX, moxY genes) while the group from the sugar cluster was designated as the sugR group (containing hxtA, glcA, sugR, orf genes) (Table 4).
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This cluster is designated as a low-oxygen-activated (lxa) locus (BCAM0275-BCAM0323) wasch wassociatedted with persistence in B. cenocepacia J2315 when cultured in a limited oxygen environment24.
After clustering, one or more channels that are common to nodes within each cluster are designated as the control channels.
A gene cluster containing six genes encoding PPS_0380 HSP hydroxylase (hspB), PPS_4060 maleate isomerase (iso), PPS_4059 NFM deformylase (nfo), PPS_4058 DHP dioxygenase (hpo), PPS_4057 maleamate amidase (ami), and PPS_4061 6-hydroxynicotinate 3-monooxygenase (hna) was identified in P. putida S16 and this gene cluster is designated as nic 2 cluster.
The longest sequence in each cluster is designated as the "representative" sequence, which is a CD-HIT terminology.
Of 142 AFP cases from 2011, four in Ouham district were laboratory confirmed as WPV1; this cluster was designated I6C2B4C1A2.
Of 163 AFP cases from 2009, 14 in Ouham-Pende district were laboratory confirmed as WPV3; this cluster was designated D2B2B1.
Based on the substrate specificities of the defined nitrilases, this cluster was designated as the predicted mandelonitrile hydrolase subgroup.
There was also a cluster of ORFs inserted between Tn 6022 and RR2; this cluster is designated "ORFs" in Figure 4.
Specifically, the home areal unit of the entire cluster is designated as the home areal unit of a single cluster member hospital.
This gene cluster, was designated T6SS-3 and was found to be missing the remaining 11 core gene components of the T6SS.
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