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The 10 CIMP+ samples defined by the authors were all in the CIMP cluster obtained by unsupervised clustering methods in the present study.
For the M-form, comparisons between sampling sites within the same genetic cluster (obtained by structure) had in general lower FST than comparisons involving sites from distinct genetic clusters (Fig. 5, A).
Every cluster defined in this way would topologically be somewhere between a "star-like" network structure centered at the chosen SPR (as illustrated in Additional File 4 Figure S2 that presents the EDNRB cluster obtained by this "direct neighborhood" approach) and a fully connected network.
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Fig. 9 Dendrogram of the 40 clusters obtained by hierarchical clustering in Japan.
The 40 clusters obtained by k-means clustering were prepared for globally common divisions.
To evaluate the clusters obtained by different methods, we also calculate the purity of the clusters.
This means the clusters obtained by these indices are cohering to the centroids of the clusters.
The maps in Figure 3 show the spatial clusters obtained by LISA.
The religible(i) of k = 30 clusters obtained by different methods are shown in Figure 5.
(d) Final color clusters obtained by the Nikolaou color reduction method [14].
(g) Final color clusters obtained by SWT voting-based color reduction.
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