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Qualitatively, the simulations in these clusters aligned with the theoretical predictions of the four moral strategies we aimed to capture (see Fig. 2b).
Unsupervised sample clustering aligned with experimental conditions and was consistent with the factor analysis.
Most grid-based methods have mainly focused on the detection of single rectangular clusters aligned with the grid.
Each lane was aligned in real-time with the phiX genome and between 0.80% and 0.84% of the clusters aligned, with a median of 0.81% aligned.
Protein sequences in each cluster were aligned with mafft_wrapper.py, each alignment was trimmed with pep_gblocks_wrapper.py, and all alignments were finally concatenated into a supermatrix.
The protein sequences of members in each cluster were aligned with ClustalW [ 43] and the alignments were used to generate neighbor-joining trees with the two-parameter substitution correction.
The retrieved entries were clustered and aligned with CAT (Clustering and Alignment Tools) program [39], successively followed by manual edit, alignment with zebrafish genome assemblies, gene prediction with GENSCAN program [40], and BLAST search of zebrafish EST database.
The nucleotide sequences for each cluster were aligned with PAL2NAL v.14 [ 155] to correspond to the trimmed amino acid alignment and ensure that the correct reading frame was maintained.
The complete mt genomes in each cluster were aligned with Mauve v.2.3.1 (Darling et al. 2010) using the full alignment option.
The dynamics and stability of a charged two craft formation with nominal fixed separation distance (Coulomb tethers) is studied where the cluster is aligned with either the along-track or orbit normal direction.
The scaffold content of each cluster was aligned with Mafft 6.864 b, using the L-iNSI method and default parameters (Katoh et al. 2005).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com