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The phylogenetic groups of phyla and class levels are shown aside the close clusters.
Clusters are updated at regular intervals of the algorithm to allow merging of close clusters approaching the same local minima.
The cluster-size-based scaling improves the clustering by increasing the separability of close clusters, especially when they are of disparate size.
The PFMs of the bHLH family were clustered into three homogeneous groups, with six PFMs forming a bHLH-zip subclass in one group and four PFMs in other two separate but close clusters.
At the same time, hierarchical clustering with Euclidean distance was used to form the groups based on raw data showing that there was certain homogeneity since samples from the same areas were grouped into close clusters (figure S1F).
Finally, pattern 6 markers represent markers that show extremely close clusters due to assaying a large number of loci.
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Namely, the clustering result does not depend on the precise choice of input parameters, and different parameter values have close clustering results including dimensions associated with clusters.
Phylogenetic analysis of these near full-length genome sequences revealed that all genotype 5 sequences formed a close cluster with high bootstrap support.
Well points are highlighted on Z-2 surface map showing the close cluster of the existing wells at the far eastern region of the reservoir.
Phosphomannose isomerases do not fall in a close cluster but contain Zn at their active sites.
However, the close clustering of these domains implies a conserved, yet unidentified function.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com