Sentence examples for clock prior from inspiring English sources

Two analyses, replicated once, were reconstructed; one with a relaxed-clock (log-normal distribution of nucleotide rate variation), and one with a strict clock prior.

We removed outgroup taxa and ran two chains of 80 million generations under a relaxed lognormal clock prior and a mutation rate of 3.5%% per lineage per million years and standard deviation of 20%% of the mean.

A relaxed lognormal clock prior (Drummond et al. 2006) was used for the substitution rate and a skyline plot prior (Drummond et al. 2005) was used for the population demography.

Bayesian trees were derived using MrBayes [ 44], with two independent runs of 50 million generations with four Markov chains each (one cold, three heated), sampling every 1000 generations with a coalescent clock prior.

We conclude that a relaxed clock prior is unsuitable for our data in the absence of independent information, such as fossils, that can help us define a strong prior on the time to most recent common ancestor.

The population size and clock prior are reported The estimates of nucleotide substitution rate presented here reveal a more complex picture of the evolutionary processes driving the evolution of avian influenza virus than previously thought.

Therefore uncorrelated lognormal relaxed clock priors were selected for rate comparisons.

To assess the impact of different tree-shape and clock priors on our results [ 68], we repeated the analysis with yule and calibrated-yule models of speciation, under both normal and uniform distribution priors between the minimum and maximum age bounds calibration points.

Finally, we set the mean rate of the molecular clock (ucld prior) with a uniform distribution between 0.0 and 10.0 and left other priors as default.

If you can shift your body clock naturally prior to departing this can be a particularly useful technique if your trip doesn't allow for much time to adjust before kicking into high gear and demanding your top performance.

We applied a uniform distribution with bounds of 0.00424 and 0.00187 on the clock-rate prior.