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This clique structure was intended to address the following 2-fold hypothesis.
When adopting a network perspective, this information is not completely lost naturally, because it is in some measure hidden in the clique structure of the resulting network and can therefore be accessed to some degree via clique percolation techniques [21, 22], as for example in the case of social groups and proteins [9].
In module 12, the four member genes interact with each other and form a clique structure.
They formulated a log-likelihood ratio model to represent individual edges between proteins and assumed a clique structure for a protein complex.
From networks degraded by considerable noise, Neighborhood Correlation recovers network clique structure typical of the structure of gene families evolved through vertical descent.
We considered the deterministic definitions of cohesive subgraphs from both MCODE and CFinder as possible ways to explore the degree of separation versus overlapping of protein groups through their complex underlying clique structure.
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The immune sub-network also features two motifs – the semi-clique and the clique (Structures 14 and 15) – the motifs richest in mutual interactions.
The model involves both observations and states of extended length in a generalized-clique structure, where the extents of the observations and states are incorporated as parameters in the new model.
Looking at the k-clique structure is however not sufficient to characterize the mesoscopic shape of academic collaborations, as described by how the clique- and community-structure of the networks link and wrap on themselves.
Furthermore, such an approach also allowed us to easily generate such clique-structures utilizing the efficient bipartite clique enumeration method (Farach-Colton and Huang, 2008).
Only links with synchrony below 0.10 were filtered out, making the graphs similar to a clique in structure.
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