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When a signal is clipped, information about the signal is permanently removed.
The soft-clip information can be obtained from the mapped result encoded in the Sequence Alignment/Map (SAM) format [ 20].
We used the -notraceinfo option because the traceinfo file provides clipping information, whereas we had already used the clipping information to create trimmed fasta and quality files.
The SFF file also contains clipping information for each read, and various metadata.
VFS extracts all CS and MS and determines breakpoints using the soft-clipping information.
The Roche 454 instrument outputs sequences in Standard Flowgram Format (SFF) files that come with quality and clipping information.
Here, we present ViralFusionSeq (VFS), which combines soft-clipping information, read-pair analysis and targeted de novo assembly to discover and annotate viral human fusions.
Reads were trimmed with the Figaro_ trim_seqs utility of the Figaro package 35 using the vector clipping information provided by the Trace Archive.
There will be no more need to clip calendar information from magazines -- you will just scan it in.
The prosecutors took the blame for letting jurors see a video clip carrying information that United States District Court Judge Reggie Walton had barred from the trial.
The veer toward the sound bite and the video clip substitutes information for experience, which is all the more unfortunate given that the movie is centered on Bill's emotional exertions.
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