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We observed gene clusters that were clearly differentially regulated only upon one of the two treatments, such as target gene cluster 4 and 5 (Table S3).
Considering that some genes might be clearly differentially methylated in a small subset of ALL cases, a CpG was classified as hypermethylated in ALL when the mean in the controls was homogeneously below 0.25 (and none of them was above 0.5) and individual beta values were greater than 0.75 in at least 10% of the ALL samples.
The category "hormone" was also clearly differentially regulated.
Many genes were not included in the GO analysis though they were clearly differentially expressed.
In our microarray experiment, four genes involved in carotenoid synthesis were clearly differentially expressed in diapausing females (Additional file 16).
Together our data identify a large set of potentially novel and/or rapidly evolving genes that are clearly differentially expressed during regeneration.
Similar(48)
Clearly, the differentially occurring CNAs detected by comparative-KC-SMART are fully dependent on the tumors included in the groups.
A number of recent reports concerning PAMP recognition [ 9], activated macrophage transcriptomics [ 8] and immunomics [ 10- 16] and genome-wide surveys [ 17] show that fish and fish macrophages clearly respond differentially to different pathogens.
Twenty-four transcription factor genes were clearly identified as differentially expressed (Table 1 and Additional file 2).
This is clearly visible from differentially expressed gene numbers and the GO term enrichment analyses, where pricking infection resembles wounding, while oral infection shows clearly distinct patterns.
PDK-1 is highly expressed in cardiac, brain, lung, and kidney tissue, but clearly it was differentially expressed in malignant tissues.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com