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We find that the underlying small structural displacements give rise to clear electron density differences, even at 5.9 Å resolution, because of the relatively high electronic density of Mn.
Clear electron density was observed for those ligands bound in the canonical binding cleft of the Bet v1 fold (Supplementary Fig. 7a). Figure 3: Crystal structure DtHNL1.
Based on Bader's theory of atoms in molecules, subsequent electron density topological analysis uncovers a clear electron density origin for the different elastic properties.
In contrast, no clear electron density corresponding to the terminus of the peptidoglycan-mimetic side chains is present when these β-lactams are covalently bound to PBP5.
CeO2, Mn2O3 and to a lesser extent Fe0 formed clear electron paramagnetic resonance (EPR) signature for hydroxyl radicals when incubated in aerobic aqueous suspensions with spin traps.
Data collection and structure determination statistics are presented in Supplementary Table 2. Clear electron density was observed for residues 527 540 of the hydroxylated HIF-2α peptide (Supplementary Figure 2).
In the current structures, both bosentan and K-8794 are buried within the positively charged transmembrane cleft of the ETB receptor with clear electron densities (Supplementary Fig. 2a c).
Both structures contain clear electron density for bound metal ion(s) in the putative active site, assigned as zinc on the basis of the presence of excess zinc in the purification buffers and a strong signal at the zinc absorption edge in X-ray fluorescence scans of MCR-1 crystals (Supplementary Figure S3).
The SAED analysis on the CuO nanotube gave a clear electron diffraction pattern (the inset of Figure 3c) composed of several rings.
Instead, clear electron density for one SO4 2− probably originating from the crystallization solution, was observed in the nucleotide-binding site.
A clear electron density for NADPH is observed in each protomer, and the structures of the four NADPH molecules in the asymmetric unit exhibit similar conformations.
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