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28 This alignment of representative sequences was used as a training profile for the classification of query sequences.
However, the functional residue-based classification was further extended to the serine protease family, where the classification of query sequences using the method into 3 subfamilies has been described.
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Again, the proportion of pathogens in the clade determines the classification of the query, going up one level at a time until a prediction can be made, with the class level as the extreme case (the whole dataset).
Classification of a query DNA sequence is based on the taxonomic diversity of its best-matching LCA Profiles.
The output shows the classification of the query compound as anti-EGFR inhibitor or non anti-EGFR inhibitor along with the probability score depending upon the model selected.
The ts-score may not necessarily be the optimal method for testing the classification of the query sample against one tissue type.
For the classification of a query gene, the output of all machines was summed up and used as a voting score for the gene to be essential for the cell.
One data processing pipeline is used to pre-build homolog gene families, identify orthologs and dump the resultant data into the database (we refer to this pipeline as " pre-built" pipeline thereafter), and the other one is for on-the-fly classification of the query sequence uploaded online by a user into its best matched gene family (we refer to this pipeline as " on-the-fly" pipeline thereafter).
Weka supervised machine learning outputs are the classification accuracy rates of query and reference sequences, the classification models, e.g., decision trees, logic rules, etc., and the specimens to species assignments.
Finally, all oligopeptides that match the same family are combined to provide a Mosaic Match with a common similarity score for the classification of the entire query sequence.
To address the problem of query classification, Bian and Chang [22] propose a label propagation method to automatically generate query class labels for unlabeled queries from click-based search logs.
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