Similar to this we found that KO's involved in metabolism were clearly overrepresented in humans on the highest level functional classifications of KEGG modules, but not for KO's involved in information processing (data not shown).
Based on the proposed fast interpolation algorithm, we re-arrange the classification of PU splitting modules, as shown in Table 3.
Studies of the biogenesis of mitochondrial building blocks require the classification of mitochondrial functional modules and the determination of the spatiotemporal rules governing their establishment.
Based on the present analyses, a phylogenetic classification of Bce-like modules is proposed, which could serve as a reference for functional analyses.
Next, we have considered classification of the extracted modules in both permanent and transient protein associations, and have then established the protein pathway context within which this dichotomy occurs for some of the cases under study.
Randomizing the module classification of substrates eliminated the significant differences among the modules for all of the substrate properties mentioned above (table 1).
Randomizing the module classification of substrates eliminates the differences in evolutionary rate among the modules (table 1).
This yields (within seconds) the most related protein sequence (either E. coli, S. aureus, R. norvegicus, D. melanogaster, or H. sapiens, B. taurus), determines the involved GO-terms, analyses the type of modules (biological classification first) involved and delivers a pie chart according to the process types implicated by this protein according to the knowledge from these model organisms.
Based on the detailed phylogenetic analyses performed here, a system of classification of the Bce-like modules into six subfamilies was proposed.
The classification of the network structures (modules) for each studied research community should be reported and compared using appropriate statistical tests Term 'clique' should be defined mathematically.
