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Hoey [32] aims at the unsupervised classification of expression sequences by employing a hierarchical dynamic Bayesian network.
Classification of expression pattern of those 3062 ESTs showed 11 sets, five of them contain 545 up-regulated ESTs and the other six sets contain 1920 down-regulated ones.
http://www.ebi.ac.uk/GOA/: GOA database at EBI. http://bioinfoserver.rsbs.anu.edu.au/utils/PathExpress-lotus/: and http://bioinfoserver.rsbs.anu.edu.au/utils/GeneBins-lotus/: databases that currently support the functional classification of expression data from L. japonicus 52K.
This is in contrast to the model-based classification of expression profiles that we present here.
Classification of expression profiles into eight dynamical modes was performed in two ways.
Q4: How does BlockClust compare to other tools for clustering or classification of expression profiles?
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We are also restrictive in the classification of the expression relationships as linear expression relationships and the consequent consideration of two genes as coexpressed genes.
We present a categorical Bayesian network framework based on an original learning method for analysis of gene expression data, in particular, for classification of gene expression profiles coming from different populations.
Fig. 2 Volcano plots of differently expressed genes Fig. 3 GO classification of differential expression genes (DEGs) in seeds vs. protocorms Fig. 4 KEGG pathway enrichment scatter diagram of differential expression genes (DEGs) in seeds vs. protocorms.
Although a few studies have demonstrated that SL is an appropriate method for the classification of gene expression data [ 37, 38], there has been no comparison of this method to other methods using gene expression data.
In addition to the classification of gene expression profiles, this report identifies a list of tissue-specific biomarker candidate genes.
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