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We recommend having the classification file open to explore while reading the descriptions and instructions below [see Additional file 1].
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The 1601 tissue-selective genes covered a wide range of cellular and molecular functions as they could be annotated into 1694 distinct Biological Process, 1094 Molecular Function and 290 Cellular Component functional families from the three gene ontology classifications (File S1, tables 0.2, 0.3 and 0.4).
The DEGs had a GO ID and can be categorized into small functional groups in three main categories (biological process, cellular component, and molecular function) of the GO classification (Additional file 18: Table S8, Additional file 19: Figure S11).
Control patients were sampled on the first and third day of complying to their classification (Additional file 1: Table S1).
As we can observe in the proposed classification (Additional file 1: Supplementary Table) there are still some adjudicators not addressed by current approaches for FT-compositions, e.g., median, mean voters and acceptance tests.
It was also observed that Cladosporium herbarum and Cladosporium cladosporioides strains were constantly misclassified for all the methods of classification (see File S2).
A total of 743 annotated genes were used in functional classification (Additional file 1).
Out of 30,500 nr hits, 5,339 sequences had a COG classification (Additional file 2).
This analysis revealed 45 AP2/ERF with partial AP2 domain that did not allow gene classification (Additional file 1).
The surface area of each membrane molecule was determined by its classification (Additional file 2: Table S5).
For 17 cassettes the CRISPR-type assignments did not match the repeat-based classification (Additional file 3: Table S2).
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