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Then the distance between any two classes of patterns are computed from the R classes using the Minkowski distance.
We take advantage of the capabilities of sets (intervals and their Cartesian products) when describing a core structure of classes of patterns in the form of some hyperboxes.
Given p classes of patterns, Ck, k=1, 2, …, p, the algorithm selects the patterns of all the classes and opens a hyper-cube HCn (with n dimensions) with a size such that all the class elements remain inside HCn.
Based on 3′-ESTs with poly(A) tails, Yan et al. [ 11] found four distinct classes of patterns of APA in the human, mouse, and rat genomes: tandem poly(A) sites, composite exons, hidden exons, and truncated exons.
Our likelihoods are half of those in [ 17] that are prescribed over a sample space of only four classes of patterns: {0, 1}, {2, 3}, {4, 5} and {6, 7}.
The best overall accuracy we report in this article for classifying 942 proteins into 13 classes of patterns is about 84.6%, which to our knowledge is the best so far.
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Several classes of pattern recognition receptors (PRRs) are involved in the recognition of MTB, including Toll-Like Receptors (TLRs), C-type lectin receptors (CLRs) and Nod-like receptors (NLRs) linked to inflammasome activation.
The absence of pattern recognition receptors suggests that fungi may possess novel classes of pattern-recognition receptor, such as the modified adenylate cyclase, or instead rely on secretion of anti-microbial secondary metabolites for protection from microbial attack.
While TepI and TepII are expressed constitutively at low levels, and only upregulated upon immune challenge [61], we found that spaceflight affects the constitutive expression of all these classes of pattern recognition molecules.
Toll-like receptors (TLRs) and RIG-I-like receptors are two separate classes of pattern-recognition receptors (PRRs) that detect viral infection and initiate signaling cascades including IRFs and type I IFNs (for review, see [54]).
Recognition of fungi-associated molecular patterns involves several classes of pattern-recognition receptors.
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