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Two classes of duplication events are easily distinguishable: Local (tandem) duplications result in paralogous sequences that are (typically) located on the same transcript.
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The events involving recombination between large (>300 bp) regions of homology were Rad52p-dependent, and all classes of duplications had a requirement for Pol32p (Payen et al. 2008).
Here we consider another class of duplications: large segmental duplications (also known as low-copy repeats) that are common in many mammalian genomes [ 14].
Complex conditional statements are also a form of duplication and may indicate that multiple clients have to duplicate actions that should belong to the target class.
We exploit novel genomics resources for evolutionary analysis of the complete GS pathway inventory in both A. thaliana and Ae t. arabicum to utilize the impact of different kinds of duplication classes to diversification of plant secondary metabolites.
Germline and somatically derived inversions and transpositions were present in approximately equal frequencies while somatically derived SVs were more frequent than germline derived variants for all other classes of SVs (insertions, inverted-duplications, tandem duplications and translocations).
Ignorance of PBL as a whole curriculum strategy may lead writers to construct problems as independent entities, disregarding content overlap with the week's scheduled classes or duplication of the preceding problems' learning objectives.
As in the majority of these cases the closely-spaced TA gene pairs belong to different classes of TAS systems, tandem duplication cannot explain the observed pattern.
Most importantly, certain classes of SVs, including tandem duplications, inversions, translocations and particularly highly complex events, are not yet sensitively ascertained in split-read-based analyses.
Some of them have stressed the importance of duplication in a class of sodium channel genes for the origin of EOD production and diversification in weakly-electric fishes, by revealing the presence of important functional substitutions across paralogs and by discovering their differential patterns of expression between electric organ (EO) and skeletal muscle (SM) [ 18, 19, 22].
The evolutionary model we evaluated assumed two classes of branches with different ω values: Duplication branches (resulting from a duplication event labeled on the OG's phylogenetic tree) and speciation branches (the remaining branches, i.e., those resulting from speciation events).
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