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This was necessary for certain classes of accessions which do not appear in the Golden Path database (e.g. the "XM_" series of predicted refseqs).
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The present study defines for the first time the existence of a new class of Arabidopsis accessions with an intermediate phenotype between slow and rapid cycling types.
Among a core collection of accessions, 5 NUE classes emerged from these experiments with Col-0 and Tsu-0 at opposite ends12.
Principal component analysis showed that genotype imputation did not lead to significant differences in genetic group composition and pairwise individual distances, for all three accession classes of panel S (S.C., S.L., S.P.) (Supplementary Fig. 5a c).
Functional classes of genes based on Pfam accessions were tested for unusually high or low values of dN/ dS with Wilcoxon rank-sum tests [ 107, 108], and P-values were adjusted for multiple testing to Q-values using the false discovery rate method of Benjamini and Hochberg [ 109, 110].
The distribution of accessions among three phosphorus efficiency classes was stable across locations.
However, the power to detect an association also depends on the number of accessions in the individual haplotype classes on which the analysis is based.
Conserved domain alignment of P. falciparum phosphatases are shown in Additional files 4 and 5. Table 1 shows the name, accession number and classes of Plasmodium phosphatases analysed in the present study.
Hierarchical clustering of accessions for metabolite content.
Number of accessions.
Among the classes of transcription factors (TFs) uniquely expressed in both accessions, RAHS-14 showed the expression of ERF and WRKY families.
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CEO of Professional Science Editing for Scientists @ prosciediting.com