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We observed that a null model should satisfy two important requirements: preservation of ubiquitous constraints characterizing the class of analyzed networks and uniformity of the sampling procedure.
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Thus, the discrepancy between our study and the Gaillard et al. study is likely due to differences in 1) class of subjects analyzed, 2) specificity of the BSS assays, and 3) statistical power of the analysis.
We were able to determine the presence or absence of 15 of them in every class of animals analyzed (Table 1).
Figure S1 Phylogenetic tree of the class Aves with indications of analyzed bird species.
Furthermore, our analyses show that this pattern is consistent across all eight phyla and classes of bacteria analyzed in this study (Fig. 3 7).
Graded midterms were returned electronically, and each student was assigned a subset of questions answered incorrectly by more than 40% of the class to analyze as homework.
The JUnit test cases used in our study were developed only for a part of classes of each analyzed system (Table 1, columns 3 and 5).
We used, in a second step, the univariate clustering technique to optimally cluster in k (5 here also) homogeneous groups the source code classes of the analyzed systems based this time on a single variable (an internal class attribute in our case).
For tandem mass spectrometry, a collision gas pressure was set at 1.0 mT, but the collision energy varied with the classes of lipids analyzed as described previously [18].
G173R had the strongest effect among all classes of mutations analyzed.
Our analytical approach differs from the two classes of models analyzed in previous work.
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CEO of Professional Science Editing for Scientists @ prosciediting.com