Sentence examples for clash analysis from inspiring English sources

The glycan attachment, conformational search, and clash analysis were performed with Glyco-Pack and the glycoprotein structure was further optimized in Amber 10, using Glycam 06 and ff99sb force fields [43].

CLASH analysis confirmed this hypothesis by the observation of large numbers of tRF-mRNA chimeras.

As a control experiment, the lysate obtained from UV-irradiated human cells was mixed with an equal quantity of yeast lysates prior to CLASH analysis (details in Extended Experimental Procedures and Table S2C).

To assess the frequency at which RNA-RNA interactions recovered by CLASH were formed in vitro following cell lysis, lysate obtained from the crosslinked HEK cells expressing PTH-AGO1 was mixed with an equal quantity (measured by RNA content) of yeast cell lysate, prior to CLASH analysis based on the optimized protocol (E4).

Future research is proposed that seeks to: automate the clash detection management, analysis and resolution process; conduct further investigative analysis of the organizational and human resource management influences impacting upon design clash propagation; and devise and validate new procedural methods to mitigate clash occurrence using a real-life project.

The dependency upon population density and the differences observed in the disaggregate analysis explicitly clash with the idea of the existence of a fixed Travel-Time Budget.

Analysis of CLASH Target Downregulation after miR-92a Inhibition Data acquisition and normalization from Affymetrix GeneChip Human Exon 1.0 ST arrays were done by Source BioScience.

Analysis of CLASH Target Downregulation after Inhibition of 25 miRNAs To analyze the effect of miRNA inhibition on mRNA transcript levels in specific sets of transcripts, we used the miRNA depletion data from (Hafner et al., 2010a ).

In particular, we have enhanced the analysis of clashes and torsion angles to provide energy values.

We have improved some of the analyses significantly enhancing the analysis of clashes and of mutations to-proline and from-glycine.

DOI: http://dx.doi.org/10.7554/eLife.05005.011 Previous analysis of CLASH-identified interactions shows that the top MEME-identified motifs usually pair to the miRNA, although for many miRNAs this pairing falls outside of the seed region (Helwak et al., 2013).