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A total of 194 M130-derived Y chromosomes were extracted from the literature, and 10 M130-derived Australians typed in our previous project were included (Supplementary Table 1).
Raw signal intensities and detection P values of 22 autosomal chromosomes were extracted from GenomeStudio and loaded into Lumi.
After electrophoresis, either individual or small groups of P. carinii chromosomes were extracted from the gel and used to create a number of different plasmid libraries [ 70, 111].
A total of 114 fragile sites that located in autosomal chromosomes were extracted from a published dataset and mapped to the hg18 genome [ 31].
Shotgun barley genomic reads mapped on the virtual barley chromosomes were extracted from flow-sorted chromosome reads submitted by Mayer et al. (accession number ERP000445).
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For each tissue, the physical location information of the differentially expressed genes on the M. truncatula chromosomes was extracted.
Mate pairs that span from the viral sequence to a human chromosome were extracted.
The genomic sequences for each chromosome were extracted from the XML files and stored in FASTA format.
Using these results as a guide, all reads mapping to the relevant chromosome were extracted using a Perl script and candidate insertion sites were nominated based on the presence of overlapping reads with mates mapping to the transgene sequence.
Amplification patterns – finite or bounded descriptions of the ranges of the amplifications in the chromosome – were extracted from the clustered data and expressed according to the original cytogenetic nomenclature.
Mutation: Two routes in the child chromosome are extracted.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com