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In order to reduce as much as possible the role of preliminary choices, a method based on artificial neural networks (ANN) is proposed.
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The choice of a method is not obvious and we perform a comparative study.
However, the important number of existing approaches makes the choice of a method among the others particularly difficult.
Traits are universal, and their existence should not depend on the choice of a method to measure them.
Forgiveness is a choice and a method by which we move forward.
However, the optimal choice of a method might take place at other levels of microarray preprocessing and analysis, too.
Our choice of a method for each scenario was based on the types and quality of information available.
The choice of a method is based on the tradeoff between investigating a large number of loci in few individuals or few loci in many individuals.
To reflect this choice, we adapted a method that was previously used to assemble Illumina contigs to 454 reads [ 20].
This range of perspectives within the special issue is an important reminder that PAR can be a method choice and/or an epistemological choice.
Best:worse is a choice method that forces choice amongst a range of variables, designed to uncover 'actual' reasons for decisions made.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com