Sentence examples for choice of the alignment from inspiring English sources

Sequences were aligned using poa [52] in default mode (see [40] regarding the choice of the alignment software).

The choice of the alignment program depends on the biological application and on the type of sequencing technology used to generate the data.

Of these steps, the choice of the alignment algorithm will have the greatest impact on the recovery of accurate miRNA abundance profiles of the sequenced samples.

We evaluated the performance of VariantMetaCaller over two different pipeline sets based on the choice of the alignment software, the four variant calling methods were run on either the BWA or Bowtie 2 aligned reads.

Since the alignment results may be sensitive to the choice of the alignment score threshold, especially for the lower quality data S2, we explore the impact of this parameter "-t" in Novoalign by setting it at different values: default, 60, 70, and 75.

With respect to orthology-paralogy issues, the choice of outgroup, the alignment method (MAFFT [ 56] or Clustal [ 57]), and the use of full-length or trimmed (based on Guidance scores [ 58, 59]) alignments had little influence on the key findings of these analyses.

We discuss our choice of the aligner in the Supplementary Material ('IX. Sequence homology search via local alignment').

The choice of the three alignment-free sequence similarity measures (see below) is based on the notion of complementarity between these measures and the two alignment-based similarity measures that we chose to use in this study.

As the results presented below are robust to the choice of alignment software, we used the alignments obtained from Larracuente et al. (2008).

A judicious choice of the initial pairwise alignment should minimize these missing homologies.

Our data demonstrate (1) that design of the tibial component restricts the choice of rotational alignment and (2) that ATT is not a reliable landmark for rotation of the tibial component.