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Release 4.0 of the database provides Chromatin Immunoprecipitation on Chip (ChIP-Chip) data relevant for gametogenesis.
To validate our high-resolution ChIP-chip data of Hmt1, we used directed ChIP (ChIP-qPCR) to verify a number of the identified binding sites.
For example, our ability to validate ChIP-seq peaks not detected by ChIP-chip, using the ChIP-chip reagents and methods demonstrates that our ChIP-chip data is under representing the HLH-1 binding sites.
The most common contact call is a loud, carrying "e-gypt", while the alarm call is a sharp and rapid "chip-chip-chip".
ChIP-chip experiments were performed in duplicates.
ChIP-chip was performed according to the Agilent ChIP-chip protocol with modifications.
We used ChIP-chip ratio to assign the label probabilities.
First, different technologies (ChIP-seq v.s. ChIP-chip) were used.
All ChIP-chip microarray data were quantile normalized.
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