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This module includes functions responsible for checking the cluster status and terminating the cluster.
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Preliminary identification of clusters of orthologs of RR and HK sequences was performed by creating an orthology table of the 19 genomes used in this study using the clustering algorithm implemented in MBGD [ 43] and manually checking the clusters of orthologs thus obtained for each previously identified TCS gene.
We further checked the cluster density, i.e. the average number of ones in all binary vectors in each cluster, and selected the eight largest clusters (R1 to R8) in terms of the cluster density.
A P-value is calculated using the one-tailed Fisher's exact test to assess whether N AC /N C > N AI /N I and annotation term A is enriched in cluster C. Such functionality is very useful to check the cluster quality at different identity levels and also for function assignment of proteins with unknown function.
In order to verify our subdivision of the GH97 family into subfamilies we checked the clustering of the family members in the phylogenetic tree.
We then expanded the clusters by 500 bp windows if they contained 1 piRNA and checked the clusters that had expanded by more than 20%% of their length.
HD and 50k genotypes were used for parentage testing and to check the clustering quality of the HD genotypes by concordance analysis of the genotypes of the 1838 individuals genotyped on both chips.
The routing from S to G1 is performed within the cluster by checking the intra-cluster routing tables.
Strict quality control procedures are paramount to the accuracy of imputation, to ensure that genotyping errors are excluded prior to imputation, usually by manually checking the intensity cluster plots for all associated variants.
A home static cluster was roughly detected by checking whether the cluster included 12 00 AM or lasted for more than 24 hours, assuming that the participants were at their home under such conditions.
At the end of its collectInterval, each node will verify the number of collected measurements (including its own); if this number is at least three, the node checks the following cluster head function: F_{{{CH}}}=frac{E_{{res}}(i)}{{tilde{r}}_{i}} (4).
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