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We also used WindowMasker (Morgulis et al. 2006) to check for repeats, as the quality and coverage of the RepBase repeat libraries (Jurka et al. 2005) used by RepeatMasker has previously been questioned (Bergman and Quesneville 2007).
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To check for repeating sequence elements, the EMBOSS command line programs Equicktandem and Etandem were used with default settings to scan matreshka nucleotide sequences for tandem repeats.
Retesting after positive chlamydia test (chlamydia treatment) is recommended at 3 months for all positive tests to check for repeat infection (in England), or for test of cure (in Sweden, Estonia).
Each genome was specifically checked for repeats of the other USS type.
As each base is added, the incomplete sequence is checked for repeats.
All ESTs were checked for repeats using a modified version of the Sputnik program [ 70], using the settings -s 10 (minimum score = 10) and -L 20 (minimum length = 20 bp).
If the product is composed of dependent event then it is checked for repeated events in complemented path-sets and the uncomplemented one.
Experts revised the classification of the situations according to type of uncertainty generated and further checked for repeated (or nearly identical) situations.
23 Follow-up consisted of telephone contact or follow-up hospital visit and checking for repeat visits to the emergency department or hospital admissions.
After checking for repeated reporting, we found 49 patients who met our criteria for T. whipplei endocarditis reported in the literature (Technical Appendix Table 4); 7 (14.5%) were female (3, 4, 7 – 11, 22 – 39 ).
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CEO of Professional Science Editing for Scientists @ prosciediting.com