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However, proper evaluation of DNA sequence restructuring events and the precise characterization of sequences involved are still sparse.
Characterization of sequences at fusion loci were carried out using a combination of the FusionMap program, custom Perl scripts, and the RNAfold program.
The only way to indubitably confirm the presence of GMO is provided by the characterization of sequences from the junctions between the transgenic cassette and the plant genome as well as the unnatural associations of transgenic elements.
This limitation could be circumvented in the future by means of DNA microarray technology optimized to allow the quick characterization of sequences (and, eventually, structures) of minority genomes within the quasispecies.
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Jónsson, H. et al. Whole genome characterization of sequence diversity of 15,220 Icelanders.
The key aspects of post sequencing analysis are the identification of regions of interest, differentiation between biological conditions and the characterization of sequence differences for chromatin modifications.
Recent advances in methodologies and design of combinatorial library selection have enabled comprehensive characterization of sequence space for protein protein interaction interfaces and generation of fully synthetic binding interfaces.
In current study, we described the characterization of sequence of STT3A and STT3B from S. alterniflora.
Because we aimed at a broad characterization of sequence space, we did not filter our dataset for redundant sequences, but simply restricted the allowed sequence identity between pairs of sequences to at most 99 percent, thus obtaining a dataset of 136,677 sequences.
We demonstrate the use of the NMF algorithm for the detection and characterization of sequence motifs that include constrained positioning, producing models of both sequence content and positioning.
Standard focus in studying TEs is mostly on characterization of sequence traits that might be responsible for their mobility (López-Flores and Garrido-Ramos 2012).
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