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The topological disagreement between these two hypotheses [8], [9] is useful, because if phylogeny is going to affect the results, then using two different phylogenies is likely to have a greater effect than changes to branch lengths within a single phylogeny.
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By contrast, we found that evolutionary change in 3Me27 was best described by a pure-phylogenetic model, with change proportional to branch lengths, consistent with the significant correlation of LC3 differences between species and their genetic divergences.
A kappa value of 1 indicates evolutionary gradualism, with character change proportional to branch length.
However, the apparent change in stomatal sensitivity to branch water status induced by the humidity manipulation could be due to differences in the leaf-borne ABA levels, as previous reports describe that endogenous ABA concentrations in leaves grown for a long time under high humidity are lower than under moderate humidity [ 11, 12].
We mapped all 515 unambiguous changes to individual branches of the phylogeny.
This non-uniformity creates a potentially serious problem for RGC_CAM and similar analyses because it complicates extrapolation of the number of parallel changes to internal branches.
But the convention committee responsible for changes to the executive branch was not so convinced of the need for a change.
That is why he never commits code changes to the main branch.
About 15 years ago, retailers on Fifth Avenue in the 40's got city zoning changes to ban bank branches and airline ticket offices, arguing that they detracted from the shopping experience, Mr. Fox noted.
Penalised likelihood imposes constraints on rate variation combining a model allowing substitution rate variation among branches with a roughness penalty that mediates rate changes from branch to branch.
For this reason, methods based on topological changes and insensitive to branch lengths seem most appropriate for the purpose of defining loci for later use by a species tree/gene tree reconciliation method.
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