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Fold changes of expressed proteins in the base 2 logarithmic scale (R SC ) were calculated using spectral counting as described [15].
Kim et al. used 2-DE technology to study the changes of expressed proteins in rice leaves at 24, 48, and 72 h after infection by Pyricularia grisea (Kim et al. 2003).
Correlation of log fold changes of expressed genes was highest within the same technology.
To enable the dynamicity, LinkinPath allows users to run the pathway map animation to depict changes of expressed genes/proteins annotated in each pathway over multiple and time-series datasets (Supplementary Figs 4 and 5).
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The mean log2 fold change of expressed X-linked genes was significantly higher than zero (mean = 0.1730, n = 336, Wilcoxon signed rank test P value < 2.2x10−16, Additional file 4).
Therefore, the integration of differentially expressed genes and the subnetwork identified above can help to reduce false positives because it is believed that the expression changes of differentially expressed genes are possibly caused by the interactions with seed genes.
In consequence, subtle expression changes of weakly expressed genes potentially get lost in WAD-lists.
Aging traits are governed through changes in subsets of expressed proteins.
Multidimensional scaling (MDS) plot of libraries at the indicated time point post infection, based upon log Fold Change (logFC) values of expressed genes.
His accelerated pianism, filled with tricky rhythmic reverses and rapid changes of mood, expressed a vaulting sense of joy not often heard in the introspective realm of nightclub piano.
Validation of observed changes of differentially expressed known genes was carried out by RT-PCR or Northern blot analysis.
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