Isoform reconstruction (alignment assembly) as performed by PASA is strictly an exercise in dynamic programming to chain (assemble) together a compatible series of whole transcript alignments such that each alignment is found within a maximal chain of compatible alignments [ 5].
Due to no variation of the material amount and chain alignment of polymer (discussed above) after the NIL process, the enhancement of the UV-vis absorption intensity may be attributed to light trapping [28].
The density and orientation of the cracks were found to be affected by degree of UV degradation and polymer chain alignment of the backsheets.
Our earlier work with the hBN-PVC system [19] has confirmed the polymer chain alignment of the filler in the direction of drawing along with strain-induced exfoliation and de-aggregation of hBN.
The human homologous regions of mouse markers were obtained by parsing the chain alignment of mouse (mm9 -to-human (hg18) genomm9 -to-human
The alignment of the entire rlrA islet was reconstructed by chaining the alignments of the protein coding genes and of the intergenic regions in the order in which they are present in the islet.
After the patterning by SART-NIL method using ETFE film as mold, (h00) reflections in the q z direction and (010) reflection in the q xy direction are observed yet (Fig. 4b, c), indicating sole edge-on molecular orientation which is similar to the chain alignment of unimprinted P3HT thin film.
However, they were quite different when the glass substrate was replaced by a Teflon sheet: the uniformity of polymer chain alignments on it was difficult to maintain even in a rapid cooling process after shear cessation, resulting in a formation of irregular banded texture.
It is important to notice that although blastz chains are alignments of genomic sequences, the CSTminer alignment step is required to detect local similarities.
For pairwise alignment, a chain of fragments with maximum score can be identified [ 24].
