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In this case one considers blocks within which to find sets of such matches centered on position and does not separate into subsets for which y k[ i] = 0 or 1.
We estimated the recombination frequency at each position x along the chromosome by computing the average SGA-based genetic distance within the interval [x – 2, x + 2], corresponding to a 25-kb interval centered on position x (5 bins × 5 kb/bin).
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The dot plots shown are graphical depictions of genomic sequence aligned with itself, in which the presence of a dot at any X-Y coordinate indicates nucleotide similarity between sliding windows centered on positions X and Y of the sequence [26].
Indeed, we observe a relationship between local GC content and depth of coverage - even within regions that show contiguous coverage and are unlikely to represent introns (correlation between log coverage for positions represented by at least one sequence and GC content of 100 base window centered on that position for all bases within 3 kb of a predicted precursor is >0.25 for all tissues, p = 0).
Protein parameters were recalculated using a 9 residue window (selected for consistency with the window used in flexibility calculation), and the per-position parameter was taken as the mean of the window centered on that position.
We considered window lengths of 1 (position of change only), 5, 9, 13, 17 and 21 consecutive residues centered on the position of change.
(See "GE's Downgrade Not All Bad News").. "In Moody's view, General Electric's primary credit risks are centered on its position as a major financial institution through General Electric Capital," Moody's said as it downgraded the senior unsecured debt ratings on GE and its subsidiaries to "Aa2″ from "Aaa".
Speculation about Ms. Grann's next move has centered on a position at Random House.
The nature of intensity-modulated radiotherapy dosimetry, centered on leaf position accuracy, is common to all MLCs.
ASCA carried out target of opportunity observations centered on the position of SMC X-3 following the report of a detection of emission from SMC X-3 with RXTE.
Technically speaking, a precise localization is achieved by multiplying |ψ7> by a delta function centered on the position corresponding to either the outcome 'up' or the outcome 'down' (see the entry on collapse theories, section 5 and Albert 1992, chapter 5); where the probability of each of these mutually exhaustive possibilities is ½.
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