Owing to the large size of whole-cell simulation data, deposition to WholeCellSimDB.org is currently limited to the authors' research group.
WholeCellSimDB was designed to help researchers analyze whole-cell simulation data by enabling them to browse metadata and quickly retrieve subsets of results data.
We developed WholeCellSimDB to help researchers analyze whole-cell model simulation data by enabling researchers to easily find and retrieve results data.
We developed WholeCellSimDB, a hybrid relational/hierarchical data format (HDF) database, to help researchers organize and retrieve whole-cell simulation setup data and results data for further analysis.
We reproduce kinetic, molecular, and structural characteristics as they are commonly observed in the lamellipodium and the lamellum of cells, in excellent agreement with our simulation data [12].
Taken together, these simulation data show that cells are homogeneously irradiated by oxygen ions in this collagen scaffold, taking into account our irradiation geometry.> First, we estimated the clonogenic capacities (CFE) of SW1353 cells in standard 2D culture conditions (Table 5 and Additional file 2: Figure S2), as canonically performed in radiation-biology studies [ 35].
Most recently, the focus has been on cell-based MDMs built from precomputed MD simulation data.
In this section, the effect of wettability alteration is evaluated based on the petrophysical data obtained from the imbibition cell simulation.
Before predicting rewiring of N2, we plotted the N2 based simulation data with the real dataset of signalling and cell fate of cancer cells after treatment with drugs.
As each simulation represents a stochastic process, the number of cells in different stages differs for each individual simulation (data not shown).
Our simulation data may explain the scientific rationale behind the cell death caused by statins in GBM cells.
