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Still we could not formally exclude possible additional causal variation(s) elsewhere in the gene.
The extended LD in the MYH9 region and the extended haplotype homozygosity noted in Yoruba confound the identity of the true causal variation predisposing to increased risk of kidney disease identified in African Americans who share ancestry with west Africans represented here by the Yoruba [30].
Our data suggest causal variation with low penetrance in the regulatory region of the gene.
Usually, markers are more likely to be tags for the causal variation.
This indicates that CSN2_67 is in strong LD with the underlying causal variation in Norwegian Red.
Thus, it is possible that many of these SNPs are associated with the same underlying causal variation.
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Sanger verification revealed that all the expected causal variations related to the mutant phenotypes of interest were true positives.
Variant cataloging relies on the idea that by aggregating data on disease-causing variations and putative causal variations, we will eventually develop a comprehensive and definitive resource.
The substantial gap between associated regions from GWAS and the identification of causal variations that contribute to a disease might be filled by eQTL analysis.
Furthermore, the accumulation of genomic and transcriptomic data for more over-producing strains will also help to find out the causal variations which directly contribute to antibiotic production.
Furthermore, these sequencing-based methods possess higher explorative power than does GWAS, enabling to discover the causal variations with low allele frequencies (<5%) in complex traits [ 12], although the development of chip-based genotyping advances greatly.
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