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For cattle, individual as well as group behavioral analyses were feasible and these indicated increased path sinuosity (Z = −2.720, P = 0.007) and decreased distance to neighbors (Z = −2.551, P = 0.011).
Genotype counts per cattle individual for sites classified as deleterious.
To facilitate a comparative genome analysis between sheep and cattle, individual QTL locations and bovine QTL were extracted from the literature, and were loaded into the ovine genome database, which can be browsed at http://crcidp.vetsci.usyd.edu.au/cgi-bin/gbrowse/oaries_genome/.
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For both genes within the 945 human samples ≈50% of the variable sites were variable in only one sample (Table 3) with similar results between the 130 domestic cattle individuals.
One hundred and fifty alleles were detected in the 60 Yakutian cattle individuals across the 30 microsatellites.
Additional file 4: Predefined group DAPC of allele frequencies obtained from 38,597 SNPs genotyped in 878 cattle individuals from 37 populations.
Consequently, only ca. 1200 purebred Yakutian cattle individuals remain in three villages in the district of Eveno-Bytantaisky, one village of Uluu-Syhyy and four different farms close to Yakutsk City [ 1].
For the genetic diversity comparison, a reference population consisting of 54 randomly sampled Yakutian cattle individuals from the State farm in the village of Kustur (17 individuals) and from private farms in the villages of Batagai-Alyta (17), Kustur (4) and Uluu-Syhyy (16) in the Sakha Republic were also included in the analysis [ 3].
Cattle have individual names, and the head of the household and his sons were able to recount the age and reproductive history of each animal with high accuracy as previously observed (Swift 1981).
In cattle, overall individual prevalence (> 2 mm cut-off) was 6.8% (CI: 5.4-8.5%) with 100% herd prevalence.
> Previous studies have already determined that haploblocks are able to better predict breeding values of economically important traits in dairy cattle, than individual SNPs [ 3, 4, 7].
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