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Separately, the transcript assembly was also searched by tBLAST and parsed at the same Eval 1e−10 criteria for the best matches among the KOGs (Eukaryotic Clusters of Orthologous Groups, http://genome.jgi-psf.org/help/kogbrowser.html) reference proteins, and through the best match, KOGs functional category assignments were assigned to the query transcript.
Raters provided 1600 triage category assignments to case scenarios for analysis.
13321_2016_174_MOESM4_ESM.xlsx Additional file 3. ClassyFire's category assignments for a test set of 800 compounds.
13321_2016_174_MOESM5_ESM.xlsx Additional file 4. Comparison of ClassyFire annotations to ChEBI labeling (Statistics and Category assignments).
Generally, BI-RADS category assignments need to be adapted to the specific clinical situation.
As a result of this mapping, several more category assignments were added to complement the LIPID MAPS classifications.
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Genes that did not have any COG functional category assignment were assigned to a custom category (category X: no COG assignment).
Location-based category assignment just simplifies this process.
After the category assignment is complete, a non-redundant list of chemical categories is constructed.
Finally, a management recommendation should be given together with the BI-RADS category assignment.
While analysing the data it is possible to modify or expand the categories according to the inductive category assignment.
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