Through comparative transcriptomics, we identified 13,334 pairs of putative orthologues between sand rice and sugar beet, in which 782 unigenes were categorized into response to salt stress GO term (Additional file 11).
For the analysis of the association between COX-2 status and response to treatment patients were categorized in responsive (clinical complete and partial response) versus not responsive cases (no change/progression) COX-2 immunoreaction was performed as previously described [ 12, 13].
Other genes in this group - including three crystallin genes, genes encoding the receptor protein for melanocyte-stimulating hormone, and six mitochondrial-DNA encoded genes, which are involved in ATP synthesis - were also categorized as response to radiation genes.
In particular, a cutoff value of 8.5 mL/m2 increase in LV stroke index in response to dobutamine correctly categorized the outcome in 21 of 23 patients [32].
The genes that showed higher (≥50% change) or lower expression (≥50% change) in response to treatment were categorized as upregulated or downregulated genes, respectively.
In particular, a cutoff value of 8.5 mL/m2 increase in LV stroke index in response to dobutamine correctly categorized the outcome in 21 of 23 patients [ 32].
Interestingly, all patients in our study cohort experienced changes in the metabolite profiles in response to treatment, including also patients categorized to have a clinically stable disease.
The majority of the metabolites that had a constant contribution to treatment differences over time (categorized as response type A) showed a decreased concentration in plasma in response to diclofenac treatment compared to subjects treated with placebo.
Based on the expression patterns in response to cold stress, mlncRNAs can be roughly categorized into three major types.
Among the DEGs observed in response to thermal stress in both populations, a large proportion was categorized into the processes of cell proliferation, growth and development.
Genes were categorized into eight distinct response types representing essentially every combination of transcriptional activation and/or repression in response to exogenous ligand and/or PPARβ/δ disruption.
