Sentence examples for categorized differentially from inspiring English sources

We then categorized differentially expressed genes using the Cluster3.0 software and obtained an overview of transcriptome relationships (Fig. 6a and b).

To illustrate the importance of signal threshold detection, we categorized differentially expressed genes of the melanoma study [ 17] according to confidence based on our predictive model (Table 3).

We categorized differentially expressed genes by their Gene Ontology class using SEA, which was performed on AgriGO (http://bioinfo.cau.edu.cn/agriGO/) to identify the significantly enriched biological processes, cellular components and molecular functions.

We have deposited the mass spectrometry data to Human Proteinpedia and PRIDE repositories [ 13, 14].>> We categorized differentially expressed proteins based on their biological processes and molecular function using annotations in Human Protein Reference Database (HPRD; http://www.hprd.org) [ 15, 16], which follows Gene Ontology (GO) standards.

The GeneSifter program was used to identify and categorize differentially expressed transcripts.

Ingenuity pathway analysis (IPA) (Ingenuity Systems, Inc. CA, USA) was performed to analyze and categorize differentially expressed genes into different functional pathways.

A GO enrichment analysis was performed by categorizing differentially regulated genes into GO biological processes (Tables S4-S9 – Additional file 10).

Our Gene Ontology analysis allowed us to categorize differentially expressed genes in relation to the molecular functions, biological processes, and cellular components they are associated with.

We used KEGG [ 21] and GO [ 22] enrichment analysis to categorize differentially expressed mRNA and miRNA genes into biologically relevant pathways and processes.

To categorize differentially expressed genes based on their subcellular localization and biological functions, the rapeseed DETs with unique AGIs were submitted to the Munich Information Center for Protein Sequences (MIPS) catalogue of A. thaliana genome [ 67].

To categorize differentially expressed genes according to their biological functions, the closest Arabidopsis homolog (Arabidopsis gene identifiers, AGIs) of a S. matsudana gene was determined was determined by a translated nucleotide BLAST (BLASTx) of the coding sequence of the best P. trichocarpa hit against the Arabidopsis protein sequence data set.