We identified two major categories of genes, displaying gradually reduced or gradually increased expression patterns across this developmental window.
Different categories of genes involved in secondary metabolism were selectively regulated by apple stem grooving virus, fungal pathogens and E. amylovora.
Further, several categories of genes were overexpressed in CSS compared with native skin, including genes associated with hyperproliferative skin or activated keratinocytes.
Using codon-biased eGFP sensors, and multiplexing of codon usage with transcriptome and proteome analyses of over 6,000 genes, we identify two categories of genes, as well as specific gene identities that depend on Elongator for normal expression.
Two functional categories of genes were significantly overrepresented among the DEGs when GC and wild-type lines were compared, namely those relating to hormone regulation and lipid metabolism, both involving key regulators of SAR49.
We performed gene ontology (GO) enrichment analysis to assess which functional categories of genes were most subjected to change at either the transition from uni- to multicellularity or during the acquisition of multicellular complexity.
This overlap was observable at three levels: (i) individual genes; (ii) general functional categories of genes; and (iii) molecular pathways implicated in aging.
From the quantitative point of view, it is noteworthy that all categories of genes (except R genes) provide, on average, the same levels of resistance.
This group comprised two categories of genes.
Overrepresented and underrepresented categories of genes were searched in hypomethylated and hypermethylated genes.
For some functional categories of genes pseudogenes are more prevalent than functional genes.
