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While landscapes exist on a continuum between these categories, assignments were based as follows.
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Separately, the transcript assembly was also searched by tBLAST and parsed at the same Eval 1e−10 criteria for the best matches among the KOGs (Eukaryotic Clusters of Orthologous Groups, http://genome.jgi-psf.org/help/kogbrowser.html) reference proteins, and through the best match, KOGs functional category assignments were assigned to the query transcript.
COG and KEGG function categories assignment of a given category in YeastWeb is pre-computed using the BLAST program with an E-value of 1e-5.
A total of 21,102 category assignments were made, for an average of 26.38 assignments per compound.
Raters provided 1600 triage category assignments to case scenarios for analysis.
Generally, BI-RADS category assignments need to be adapted to the specific clinical situation.
13321_2016_174_MOESM4_ESM.xlsx Additional file 3. ClassyFire's category assignments for a test set of 800 compounds.
13321_2016_174_MOESM5_ESM.xlsx Additional file 4. Comparison of ClassyFire annotations to ChEBI labeling (Statistics and Category assignments).
As a result of this mapping, several more category assignments were added to complement the LIPID MAPS classifications.
All 10 participant nurses completed and submitted the data sheets, providing 1600 triage category assignments to case scenarios for analysis.
On this specific test set, ClassyFire assigned a total of 1308 distinct Categories. Figure 8 illustrates some examples of the category assignments.
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