Sentence examples for cassette database from inspiring English sources

Clicking on the 'Browse cassettes' tab gives access to the entire cassette database, found under 'All'.

If the user provides explicit written permission or when the cassette is published elsewhere (in GenBank or a journal), it will be added to the public cassette database with a reference to the appropriate GenBank entry or paper.

To generate the DNA methylation, MeCP2 and Ser2P-Pol II density profiles at ASE exons, displayed in Figures 1B, 4 and 5G, we extracted the database of "cassette" exons that is included in the MISO software package (version 0.2).

According to the report of Partridge et al. from the University of Sydney, Australia, the vast majority of gene cassettes submitted into the GenBank database to date are extremely rare (presented less than 10 times), while a small group of gene cassettes are extremely frequent, they were named "successful" cassettes [ 27].

To obtain our dataset we extracted all of the adjacent cassette exons deposited in the Altsplice database of the ASD project ([ 25], see Methods), resulting in 4326 adjacent cassette exon pairs from 2451 genes in human and 1905 adjacent cassette exon pairs from 923 genes in mouse (Information for all pairs are listed in additional file 2).

Thus, on the date Feb 6 , 2015 the aadA1 cassette has been presented in the GenBank database 910 times, the aadA2 cassette 601 times, the aadA5 cassette 248 times, the dfrA1 cassette 348 times, the dfrA12 cassette 245 times, the orfF cassette 218 times, the dfrA17 cassette 209 times, the orfC cassette 135 times, and the sat2 cassette 79 times.

Our data set of adjacent cassette exons was extracted from the Altsplice database of EBI (release2, April 2005)[ 25].

The nucleotide sequences of the gene cassettes have been deposited in the GenBank database under the accession numbers shown in Table 2.

(not determined) aBLASTP hits from non-redundant database as of July 2005 Interestingly, Vibrio gene cassette arrays vary enormously in the proportions of their contents which is composed of non-coding cassettes.

Recently, the Alternative Splicing Database (ASD) project at European Bioinformatics Institute EBII) [ 30] further classifies cassette exons into simple and complex cassette exons ("simple ASEs" and "complex ASEs").

For example, the approved name of ABCA4 is written as "ATP-binding cassette sub-family A (ABC1), member 4" in the HUGO database.