Sentence examples for calling threshold from inspiring English sources

A Genotype Quality Score (GQ) of <0.25 indicates a STR genotype with a Genotype Quality Score beloew the calling threshold of GeneMapper v3.0 software.

Genotypes were imputed from 89% of cases (n = 1,659) and 90% of controls (n = 2,639) using a 7-Mb region and a calling threshold of 0.7.

Rather than applying a rigid cut-off rate for heterozygous variant reads across all loci (e.g. >30% variant reads), the optimal calling threshold was defined as that frequency which maximizes the number of correct NGS genotype calls (based on comparison to Illumina genotyping data).

The only difference being the indel calling threshold, which was increased to a 13% change relative to the reference, with a 4.5 kb minimum.

We scored our raw AFLP data using AFLPScore, normalized our data to the median, filtered our data with a locus selection threshold, and used a relative genotype calling threshold.

In total, 106,700 of 762,174 (14%) bases failed to meet the fivefold calling threshold, resulting in SNVs being missed by WES in 19 patients; only 6 patients had all 16,569 base pairs of their mtDNA completely "covered" (fivefold) by WES.

Using these criteria, we established calling thresholds for the range of 3X to 23X coverage.

As these individuals share parental origin, we hoped to detect additional variants above calling thresholds at regions of low coverage.

We used the first set as a training set to establish calling thresholds, and the second set was used for the validation of the calling strategy.

Such solutions are sensitive to the peak calling thresholds and cannot detect quantitative variation in TAL1 occupancy.

It was called "Threshold," prophetically for me.