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Call rates are very cheap, sometimes free.
SNPs with low call rates (< 80%) were excluded from further analysis.
These SNPs also had high call rates.
SNPs with call rates <0.95 were excluded, as were DNA samples with call rates <0.95.
Call rates also correlated with nightly capture rates (Table S2).
The remaining 57 arrays had call rates ≥ 98.6%.
Table S1 summarizes information on call rates per mtSNP.
For each cohort, samples with call rates <90% and single nucleotide polymorphism (SNP) assays with call rates under 90% were removed.
Samples with GenCall_10 scores below 0.4 and/or call rates below 90% and SNPs with call rates below 90% were failed.
Call rates were >97%.
All samples had call rates >97.5%.
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