Exact(8)
JF: Sequence alignment and call peaks.
YF: Sequence alignment and call peaks.
We used MACS to call peaks on each replicate of cChIP-seq and ENCODE data [ 16].
MACS[ 27] was employed with default parameters to call peaks from ChIP-seq data.
In this experiment MACS software [ 35] was used to call peaks representing enriched binding sites.
Although many models and programs are available to call peaks, none has dominated its competition in comparison studies.
For example, because the DCC lacked resources for signal processing, we relied on data providers to call peaks themselves.
By anticipating peak structure, BayesPeak does not call peaks based on sheer numbers of reads without appropriate read formation.
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