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Given a pair of gene products, g i and gj, annotated to a set of GO terms A i and A j respectively, the GO-driven similarity, SIM(g i, g j), is calculated by aggregating maximum inter-set similarity values as follows: These calculations were implemented with the SimTrek system [ 18] under the Cytoscape platform [ 45].
Total energy calculations were implemented using the residual minimization method to determine the electronic ground-state.
A large-size box consisting of 25 × 15 × 12.815 Å was used, and gamma point calculations were implemented.
The energy and exergy balance calculations were implemented and the corresponding Sankey and Grassmann diagrams were drawn.
In this scheme, the scalar relativistic calculations were implemented within a spherical average on the spin-orbit interaction, using four-component Kohn-Sham-Dirac equation[21].
Mathematical modeling was carried out in the framework of continuum transport phenomena, and numerical calculations were implemented by using the finite element method.
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The calculations are implemented in Python and are available as open source software (see Availability and implementation).
Finally, simplified life cycle assessment calculations are implemented in the third step to cover environmental considerations.
The superscripts h and o indicate that the calculations are implemented in the hidden layer or output layer, respectively.
All the calculations are implemented by a computational program, in which the components of GIS are used to fulfill the spatial temporal analysis model.
The train movement calculations are implemented using Newton's laws of motion, taking into account train resistance, track curve, gradients, speed restriction and modes of operation [16].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com