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Further, our calculations of accuracy were largely congruent with theoretical predictions of accuracy calculated using Felsenstein's [17] modification of formulas developed by Fu and Li [34].
For each of the datasets in this study, 150 independent partitions were made for calculations of accuracy and reproducibility.
All calculations of accuracy below are however done based on raw genotype calls to avoid a bias in favor of either BEAGLE or IMPUTE2.
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A variance analysis for the calculation of accuracy characteristics and stepwise procedure for the selection of mathematical models with successive selectivity optimization were realized.
The remaining 25% of Africover settlement polygons were rasterised to the same 30 m spatial resolution grid as the settlement maps, and all grid squares within each settlement extent were identified for the calculation of accuracy statistics.
This fibrosis stage classification was used as the reference for the calculation of accuracy.
For calculation of accuracy some hospitals and months were excluded from analysis, and this may give an incorrect impression of the quality of NOIS-SSI.
This calculation of accuracy standardizes the covariance between dEBV and DGV in order to account for heterogeneous variances among sires [ 20].
It might be equivalent to the BayesB method but it has additional benefits like the calculation of accuracies for individual breeding values.
Calculation of the exact prediction error variance covariance matrix is often computationally too demanding, which limits its application in REML algorithms, the calculation of accuracies of estimated breeding values and the control of variance of response to selection.
In quantitative genetics the prediction error variance-covariance matrix is central to the calculation of accuracies of estimated breeding values (u ^ ) [ e.g. [ 1]], to REML algorithms for the estimation of variance components [ 2], to methods which restrict the variance of response to selection [ 3], and can be used to explore trends in Mendelian sampling deviations over time [ 4].
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