Sentence examples for calculation of read from inspiring English sources

High sequencing depth and the calculation of read ratios is essential for haplotype-based CN estimation.

Calculation of read depth across the whole genome was done with the help of SAMtools v0.1.18 (r982 295) [ 50].

For EA, the main bottleneck lies in the calculation of read counts or RPKM on the input regions.

Calculation of read depth across the whole genome was done with the help of SAMtools v0.1.12a [ 51].

The error prevented mismatches from being properly counted in the calculation of read accuracy (insertions and deletions were).

The calculation of reads per kilobase of transcript per million mapped reads (RPKM) was done by using the program 'clc_ref_assemble_long' of CLC Assembly Cell version 3.2.2.

mRNA abundance is determined by sequencing either 3' end tags or random cDNA fragments (digital transcript expression, DTE), followed by read alignment to reference databases and calculation of aligned read frequencies.

Transcript abundance was determined by the calculation of Reads Per Kilobase of exon per Million mapped reads (RPKM) [ 30].

For gene expression determination, we performed a standard calculation of Reads Per Kilobase of Gene per Million Mapped Reads (RPKM) [ 63].

This could largely conquer the inaccuracy of read depth calculation for each type of sliding windows arising from hard masking of the reference genome.

Base-calling and quality value calculations, various quality controls including removal of reads containing primer/adaptor sequences, trimming of read length and filtering of high-quality reads based on the score value were performed by the Illumina data processing pipeline.