Sentence examples for calculation of accessible from inspiring English sources

Our approach to recognize solvent exposed and buried residues based solely on Cα positions involves calculation of accessible surface area values of Cα using a probe sphere of appropriate radius.

The number of beds is a calculation of accessible beds in the institutions as of 31 December each year [ 24].

Thirdly, a B-cell epitope is identified from the validated antigen-antibody structures based on the calculation of accessible surface area and atom distance.

Calculation of solvent accessible surface area of CKm residues.

This provides an estimate of the solvent exposure based on the ratio of the side-chain surface area to "random coil" value per residue, performing an analytical calculation of solvent accessible surface area residues.

This program performs analytical calculation of solvent accessible surface area based on the atom coordinates of a PDB file and provides an estimate of the solvent exposure based on the ratio of the side-chain surface area to "random coil" value per residue.

GETAREA, a software algorithm for calculation of solvent accessible surface areas, was used to identify the amino acid residues of each protein that had greater than 50% surface accessibility; and these residues were then used to calculate the surface GRAVY score.

This study concluded that Tg induced a localized structural perturbation and, based upon calculation of solvent-accessible surface area, concluded that Tg was partially extrahelical (11).

Although a structure of free bH1-44 is not available for calculations of solvent accessible surface area, the thermodynamic data suggest that no significant refolding of the CDR loops involving changes in exposure of hydrophobic groups concurs with antigen binding.

Structural analysis and calculations of the accessible side-chain surface area in Form A and Form B crystals of H. pylori MotB-C and in the crystal structure of the periplasmic domain of Salmonella MotB [7] (Table 1) show that all five conserved residues are clustered on one side of the molecule and are completely shielded from the solvent by loops (β1α1), (β2α2) and (β3β4) (Fig. 1(B)).

These were estimated from calculations of solvent accessible surface using the program EDTSurf, which was modified to allow exclusion of internal cavities [Xu, D., personal communication].