Sentence examples for calculating the alignment from inspiring English sources

Though demonstrating previous promising performance, we observe that these algorithms may suffer from the approaching in calculating the alignment.

Acceptable (or "mapped") alignments were distinguished from rejected (or "unmapped") alignments by calculating the alignment score for each sequence.

Depending on the requirement, the node-based or edge-based weights are used in calculating the alignment score [ 8].

Mugsy can align draft genome sequences and does not require a reference genome for calculating the alignment or interpretation of output.

This software uses the CAP3 assembler [ 70], which takes into account the quality of sequenced nucleotides when calculating the alignment score.

The Threaded Blockset aligner (TBA) (Blanchette et al., 2004) also does not require a reference genome for calculating the alignment, but it produces many short local alignments that require ordering against a reference genome.

The Ka/Ks Calculator Tool calculated the multiple sequence alignment and the phylogenetic tree from these input sequences, translated the DNA-sequences to protein, calculated the alignment, transformed it back to DNA, and aligned it on codon boundaries for Ka/Ks calculation.

10 1 D CH (Table S3, Electronic supplementary material) were extracted from the spectra and they were used to calculate the alignment tensor for each possible conformation using the SVD method [22].

The program MODULE was used to calculate the alignment tensor from the CXCL12α molecular shape and evaluate the correlations between experimental and backcalculated RDCs [40].

(ii) We calculated the alignment length percentage between the query and subject.

At the second step, we calculate the alignment score for each pair of nodes of the input networks.