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When calculating contingency tables, such as that shown in Table 1, only orthologous intron pairs with large length differences and different splice site strengths were considered.
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The program also calculates contingency matrices, global accuracy and kappa coefficient for the training, validation and test sets, allowing a quantitative appraisal of the predictive power of the neural network models.
For all amino acid-amino acid and amino acid-nucleotide pairs we calculated contingency tables.
SAS® procedure freq was applied to calculate contingency tables and to perform Fisher's Exact tests.
Computer program establishes cut offs at intervals, calculates contingency table for data in the interval, and determines the values for sensitivity and 1-specificity, which is plotted to the graph.
To evaluate the degree of association between our test and the gold standard, we calculated the contingency coefficient, which resulted in 0,65 out of a maximum 0,7(p < 0,001).
Statistical significance of the trend on Figure 1F was calculated using contingency tables 2 × 4, d.f.
ORs were calculated using contingency tables and Fisher's exact test because of the sample size.
Se and Sp were calculated from contingency tables abstracted from each study.
Odds ratios (OR) were calculated using contingency tables, and p-values were calculated using Fisher's exact test.
Odds ratios were calculated using contingency table and the Chi-square test; one-sided p value was calculated.
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